Showing posts with label digital publishing. Show all posts
Showing posts with label digital publishing. Show all posts

Wednesday, January 11, 2023

Better article PDF

When you publish an article, you want it to be discoverable by other researchers. This requires that it be indexed. Indexing systems need metadata, which they usually extract from the PDF files in digital libraries or other document repositories.

Ideally, a manuscript submission system collects the necessary metadata from the corresponding author when the final manuscript is submitted. Since author names are not unique, a good system will require each author to log into the system using their ORCID credentials, which also ensures that all coauthors know they are such.

Some metadata is not known by the submitter, for example, the DOI, volume and issue number, page, and publication date. Such metadata is added by the managing editor. In some journals, the managing editor creates all metadata, but it is safer when the publication system generates algorithmically the metadata from that provided by the corresponding author.

Some publishers omit the verified ORCID collection from the authors. In that case, you should put each author's identifier in the author declaration. When you create your manuscript using LaTeX, you can use the package orcidlink. In the preamble add

\usepackage{orcidlink}

and in the author declaration add your ORCID

\author{John Doe\,\orcidlink{nnnn-nnnn-nnnn-nnnn}}

Some publishers just publish in their digital libraries the final PDF they receive. If you just submit the default format file you generated, it will not have any metadata and your article will not be discoverable. It is safer, to submit the article in the PDF/A archival format and with your metadata included as XMP so it can be extracted by the web crawlers of the indexing organizations.

You could accomplish this using the full version of Acrobat, but as I wrote above, manual operations are not recommended and you should let the LaTeX typesetter do it. Fortunately, River Valley Technologies has contributed a package called pdfx to automate this step. You already have this package with the standard LaTeX installation.

After importing this package, you also import hyperref. Then you write an xmpdata file declaring the metadata. You can find all the information in the exhaustive help file. The import order is important, for example in the preamble you could declare

\usepackage[a-1b]{pdfx}

\usepackage{hyperref}

If you are an editor and maintain a template for your journal, you can also embed the xmpdata file at the top of the preamble. The help file explains how to do that.

You can check the PDF format and the metadata with the free Acrobat Reader. I have generated the following two documents using the method described above:

article

slides



Thursday, June 6, 2013

Proofing a page for color discriminability problems based on color names

Now that there is a physiological basis for color categorization, we can ask ourselves what this is good for. We cannot eat it, but it might have considerable commercial value in United States Patent 8,456,694 issued two days ago on June 4, 2013. I am not a lawyer, but it appears that if you take two colors, determine their names, and then do anything with it, you might have to license this patent (but you can still keep your hippocampus ☺).

In large American corporations, when a new CEO start their new position, they often begin by putting their mark on the company's branding. They remodel their office and maybe even the HQ entrance, tweak the logo, design a new font, change the corporate palette, etc. These endeavors cost millions of dollars, but big corporations can afford it, especially when as a consequence other big corporations get motivated by the new branding to buy more widgets of the new CEO's company.

The only pity is that often this means that entire forests are wasted when the company has to reprint all its marketing collaterals. Around 2000, my employer at the time had a big warehouse in Campbell with product brochures, but fortunately our manager had been able to convince the company to deploy a document management system and print the marketing collaterals on demand, just when they were needed.

The hard problem came when a year later the CEO decided to change the color palette. Although all brochure chunks were stored digitally, when a brochure was produced by combining chunks with the old palette and chunks with the new palette, the resulting brochure looked inconsistent.

Colleagues Hui Chao and Xiaofan Lin quickly wrote code that could perform a wide range of graphical changes to the collaterals in the repository, and this writer wrote a few lines of code that would replace an old palette color with the perceptually nearest color in the new palette. Unfortunately, already the first test run demonstrated that this was a hack that did not work in practice. For example, many chicklets ended up having bright green text on orange background, something chromatically challenged people with color vision deficiencies could not read.

The solution that worked was to use a model to compute the names of the foreground and background colors, then change one of them to the nearest color in the new palette that was at least to color name categories away from the other color. This solution ended up being very good in practice and we wrote very efficient code that could process a large repository in a very short time.

I guess a sign of good engineering is to have the intuition for an unexpected solution before the scientists have worked out all the facts, …and we did not need nuclear bomb explosions.

Tuesday, February 12, 2013

New SPIE open access program

As of January 2013, all new articles published in SPIE journals for which authors pay voluntary page charges are open access immediately on the SPIE Digital Library. SPIE asks journal authors (and their employers or other funders of their research) to provide such support to enable SPIE to hold down subscription prices and maximize access to the research published in SPIE journals. Many authors and institutions provide this support and will now obtain open access for their articles by doing so.

Increasingly, employers and research funders require authors to publish their articles with open access and authors want to do so in order to expand the reach of their research. SPIE provides the benefit of immediate open access for all articles for which voluntary page charges are paid. In these cases, authors retain copyright and SPIE licenses these articles under the Creative Commons Attribution license (CC-BY 3.0).

SPIE recognizes that researchers have modest funds to cover publication expenses. The voluntary page charges will continue to be low: $100 per published two-column page (for journals with both print and online formats) and $60 per published one-column page (for journals with an online format only).

For more information see http://spie.org/x85022.xml

Wednesday, February 23, 2011

Mik Lamming's Digital Darkroom

In the mid-eighties the world of electronic imaging was still rarified. Researchers were pushing the state of the art on very expensive computers and vying to get their papers into SIGGRAPH. Some years earlier, IBM's monochrome Selectric typewriter and the monochrome Xerox copier had banned color from the office, with the demise of color ribbons (black and red, sometimes blue too) and multicolor mimeographs.

Monday, February 21, 2011

Pity the Pilcrow

Fascinating ancient history of ¶, and writing in general.
Who knew that ¶ started life as the letter 'Κ' for kaput?

Aside: I’m puzzled by the claim that ‘K’ represents kaput or head. As neither an epigrapher nor an etymologist, I would’ve thought the Κ was a Greek kappa, based on surrounding the text; unless it was inserted at a much later time. In which case, it would be the Latin caput for head, wouldn't it? But that's not a K. If, however, it’s a later Teutonic inscription, the word for head would be kopf.

Saturday, February 19, 2011

Open Access

I am not an expert in social media and do not know why all the feedback on this blog comes through email instead of comments. Today, I am answering to an emailed comment on my post of Friday, January 28, 2011 where I announced the links to our EI papers. The topic is open access.

It came from Dan B., who works for G. in Mountain View (emphasis is his):

Giordano,

Regardless of the cost to produce the paper, to ask for $18 for a copy is senseless from an operational viewpoint, because nobody is going to buy it. As a result, this paper that you spent so much time working on ends up in a walled garden, essentially unavailable to the world at large.

I claim that's just stupid. It is a bad grafting of electronic media onto traditional dead-tree media.

In a more perfect world:

(1) any work paid for in whole or part by government agencies, if not classified, should be put on the web, free. That includes all research done at public universities and most done at private universities. This would include all medical and genomic research.

(2) any work otherwise paid for by a corporation can, at the discretion of the corporation (HP for you), be made publicly accessible at no cost.

The physicists figured this out nearly 20 years ago. The traditional model of paying publishers huge amounts of money for paper subscriptions is passe, fini, kaput. Information wants to be accessible.

I don't believe I can put up more than 15 minutes on youtube on any account, let along yours, for free. I'd suggest that you divide it into two parts. You could call them Part1 and Part2 :-)

-- Dan

Ignore the last paragraph for now, I will come back to it at the end of the post.

The fundamental question is how does society fund the creation of art and knowledge. This was first discussed vigorously by Pierre-Augustin Caron de Beaumarchais (1732–1799). Beaumarchais was a flamboyant and boisterous figure whose life reads like a picaresque adventure, but he is the one who championed the concept of author's right (protection of the author), which through the Convention of Berne (9 September 1886) is related to the British concept of copyright (protection of the work).

Staufen, Dr. FaustThe goal of the author's right is to provide a sequential solution to the dichotomy between financing authors and open access to their work.

[I am writing from my recollection of what I learned in high school in the French literature class, so the following may be somewhat inaccurate.]

In the past, creative minds like scientists and artists were supported by patrons. Sometimes this had disadvantages, like Dr. Faustus here at left having his neck broken when his employment contract expired after 24 years and he was not able to succeed in his assigned research. Other times, especially when the creative mind was an independently wealthy patron himself, it allowed for a very comfortable and gratifying life.

Although Beaumarchais himself was in the latter category (among others he made a big pile of money selling weapons and ammunition to the insurgents in the American colonies fighting the British for their independence), he realized that when the French applied the guillotine to their aristocracy, they also eliminated most of the patrons, leaving scores of artists and scientists without the means to pursue their creative work.

He advocated that society needs their creations, and therefore has to always provide a means for them to create more work giving them two rights: the moral rights and the monetary rights to their work, i.e., recognition and means to live and create more.

What Dan B. writes is that in the case of the calibrated lunch viz. fuchsia paper http://dx.doi.org/10.1117/12.872581 (which is work for hire), the paper should be made available under open access, i.e., for free, by the hiring party.

Because of our moral rights as the authors, the paper must be available from a reputable source, like a learned society or a reputable scientific journal. In our case, the paper is available through the SPIE Digital Library (DL).

The SPIE DL is hosted by the American Institute of Physics (AIP), which for this purposes runs a datacenter or cloud computing farm and pays a staff of people to provide the service. It costs about $500 to make a paper permanently available, and their funding model is that institutions pay an annual subscription to give open access to their members.

For example, in HP Labs all employees have open access to all SPIE, IEEE, etc. papers they need for their research to create new products for the company. Although Dan's employer is an advertising company, they employ a large number of researchers and engineers to create technology that increases their advertising income. With that, I am very surprised G. in Mountain View is not an institutional member of the SPIE DL and the other fine digital libraries catering to the technologies of their interest.

What Dan is suggesting in his email is that my employer should pay the $500 to make the fuchsia paper open access. Unfortunately, my organization does currently not have the $500 to make the paper open access for Dan and everybody else. Also, to be fair it would have to make available also all papers by my coworkers, in addition to pay the institutional membership to the SPIE DL.

Actually, to research the open access process took more of my time than it took me to write the paper, so trying to swim against the flow is clearly not a good tactical move for a creative mind. The $18 is really only for the few people for whom it is not meaningful to subscribe to the SPIE DL, for example color consultants or teachers who only need this individual paper.

About "bad grafting of electronic media onto traditional dead-tree media," the AIP just lets you download a PDF file. It is each purchaser's personal business to decide how they want to exercise their fair use rights. For example, Dan's company might want to provide him with a fine HP TouchPad tablet computer, which is an excellent media delivery device for the fuchsia paper, and does not require dead tree media.

The traditional academic process for disseminating knowledge is to first publish a paper as a technical report for the consideration of one's friends and collaborators. The feedback is then used to write an improved paper that is submitted to a scholarly journal, with the referees and associate editors guiding through further revisions. This process allows the efficient dissemination of research, ensuring that readers are only exposed to quality results.

In common law countries like the USA, copyright law in principle allows the informal publication of the final paper as a technical report under certain restrictions, but this contradicts the moral right half of the law, especially in civil law countries, which use author's right instead of copyright.

The technical report version of our paper is still available as a free download from HP Labs at this link: http://www.hpl.hp.com/techreports/2010/HPL-2010-145.html. This brouillon may be adequate for starving researchers, but the moral portion of the author's right law demand that Dan base his work on the formal publication http://dx.doi.org/10.1117/12.872581 in the SPIE DL.

At this point, Dan might interject that the AIP should find other funding to host papers than charging for a subscription. In the current American economic situation it may not be politically feasible to increase the Federal tax to fund such an endeavour.

An alternative would be fund the SPIE DL through analytics and advertising. However, this is not a viable solution, because companies like Dan's fund their supposedly "free" services by intruding in their user's privacy and selling this data for a considerable profit. Do I want my competitor to be able to buy my online activity log? Certainly not, and this is why I do not use free search engines or Scholar in my work for hire. I use paid subscription services from SPIE, AIP, IEEE, ACM, Thomson Reuters and others, which guarantee my privacy.

Actually, quite a few Web 2.0 companies are more diabolic than violating privacy. In fact, their researchers no longer publish their work, keeping it secret. This is a return to the Dark Ages, which Beaumarchais aimed at preventing… When did you publish your last paper?

Now to the last paragraph in Dan's comment. If G. is so generous to publish my research video in exchange for analyzing my viewers, why is there a limit of 15 minutes? Certainly people's attention span is decreasing with time, but in computer science we learned many decades ago that artificial limits are bad. 64 KB RAM, 2 GB disk space, and now 15 minutes YouTube? I am diabolically tempted to believe that after 15 minutes G. has collected sufficient analytics on my viewers that they no longer need to provide additional air time…

And now something completely different.

Since I have been writing about author's right and copyright, the latter applies roughly to the former British empire and Japan, i.e., the common law countries, while the author's right applies to the rest of the world, i.e., the civil law (Roman law) countries. The Convention of Berne reconciles the two, but they are different.

For online content, which law applies? The convention is that the law of the country of the domain name primary registrar is determining. In the case of this blog, Swiss civil law and therefore author's right applies. In particular, this requires that you properly cite all content you use from this blog. It also requires me to cite the SPIE DL authoritative version of the fuchsia paper and not the free technical report.

It might be a good exercise to review John Locke, Immanuel Kant, Georg Wilhelm Friedrich Hegel and Beaumarchais to appreciate the concept of moral rights in author's right. As for the monetary rights, this blog is not work for hire, so contributions for purchasing equipment and electricity are always appreciated.

Tuesday, May 11, 2010

28 Colors with 1 Impression

A short video on Pantone, including some footage of the production press used and an iPad-based "swatchbook" (via Tim via Sharon).

Wednesday, April 7, 2010

Vanity publishing

The latest full issue of the Journal of Electronic Imaging has a very interesting article by Jonathan Phillips, Peter Bajorski, Peter Burns, Erin Fredericks, and Mitchell Rosen: Comparing image quality of print-on-demand books and photobooks from web-based vendors.

Wednesday, March 24, 2010

workflows for technical reports

Writing about workflows for scientific books, I recently came across two old documents while I was searching for a completely different document.

Tuesday, March 23, 2010

vicissitudes of a color book

Books can do amazing. Last October, in his post To Bits and Back Again, Nathan picked up a story on how I had to clean up the clutter on my desk. He wrote how Google's Dan Bloomberg recycled my book clutter through his secret π machine for the edification of readers on the whole planet. Here is the next saga:

Friday, March 19, 2010

Custom Print Bigger Than Search?

Last week Fast Company published a graphic that showed the spending on marketing and advertising in 2010. It's an interesting figure with lots of items of discussion. One thing that caught my eye was the difference betwen custom print versus online search.



The marketing and advertising spend for custom print publications is estimated at $19 billion while search engine ads is estimated to be $14 billion.

Thursday, February 25, 2010

Friday, December 18, 2009

Real Virtual Pages and Virtual Real Pages

From the in-box comes two different links to digital pages. In one case it's real virtual pages and in the other it's virtual real pages. From Udi comes a link to a set of collectible magcloud magazines relating to the movie Avatar. Which is interesting - a dynamic and timely publication of a physical artifact based on a movie largely constructed with computer graphics.



But what does this have to do with football you may be asking yourself?

Monday, October 19, 2009

Objects Make Better Gifts

This weekend was Alternative Press Expo in San Francisco.



During a webcomics panel at least two of the panelists said one of the reasons they decided to try out publishing a webcomic was to be able to experiment with color in their comics.

Which is to say web color is still cheaper than printed color.

Sunday, October 4, 2009